BioCreative

Commercial OS — Master Map

One page tying together the whole organism: the 4-part body (Brain / Heart / Nervous System / Eyes), the 7-director agent org, all 7 shipped process-trace diagrams, the live application's 13 frontend tabs, and the 5-VPS infrastructure they all run on. This page doesn't replace any of those artifacts — it's the launcher that shows how they connect, then links out to the real thing.

Section 1

The 4-Part Body

Every system below is one of these four organs, or the wiring between them. This is the top-level mental model — start here before drilling into any sub-page.

Organ 1 — Reasoning
Brain
Reasoning · all hybrid search (SQL + RAG + KG) · agent orchestration · methodology execution · master observer of Heart and Standalone Agents.
bc-kb (72.62.96.10) · Brain DB sfursphaicrvazkafbdi
Deep dive →
Organ 2 — Automation
Heart
Cron · API push/pull · Hub Edge Functions · ingestion pollers · workflow execution · Hub-and-Spoke sync · heartbeat reporting. Zero LLM calls in Heart proper.
bc-ops (168.231.69.81) · Hub DB mjsgtszehjltxmbxtctz
Deep dive →
Organ 3 — The Wires
Nervous System
Soul · skills · rules · workflows · canon docs · Obsidian vault · Standalone Agent registry · the MCP wires (heart-mcp, brain-mcp, ssh-mcp, brain-router).
biocreativeaihub git repo (markdown, human-authored)
Deep dive →
Organ 4 — Display + Capture
Eyes
Hub frontend · Ops Dashboard · KB chatbot · Launch dashboards · Heart Slack bot (reports) · Brain Slack bot (chat) · Cascade · Academy UI. Bidirectional.
Every human-facing surface, across every VPS
Connection map →
Section 2

Agent Org — CEO Conductor + 7 Directors

A CEO Conductor sits above all 7 Directors, who plan and dispatch to their own sub-agent fleets. Cortex Inbox stays the human gate — every director and sub-agent proposes only, Brian confirms. Legal and Finance are credential-walled off from the other five.

Phase 4a
Dev Director ⭐
Full IC: writes/reviews/maintains all confirmed code; builds sub-agents for other directors.
Live
Phase 4b
Sales Director
Pipeline mgmt, targeting/scoring, proposals, MI, Miller Heiman, blue sheets.
Partial
Phase 4c
Operations Director
Post-signed client work, FRO support, intelligence-pipeline orchestration, catch-all.
Designed
Phase 4g
Marketing Director
Outbound content, brand, social, paid ads, event/physical mgmt, multi-touch.
Live
Phase 4e
R&D Director
Learning library, market scanning, evergreen idea queue, prototyping.
Designed
Phase 4f — walled off
Legal Director ⭐
Post-signature contract wrap (MSA/SOW/NDA), redline reviews, compliance tracking. Hub DB only, no UX.
Walled
Phase 4g — walled off
Finance Director ⭐
Cash-basis ledger, invoicing, AR/AP, monthly P&L, quarterly tax, tech-stack costs. Core DB only.
Walled
Full detail
Open the Agent Org Map →
The complete visual org chart: every director, every sub-agent, every Standalone Agent, and how they call each other.
Live
agx-org-map.srv796713.hstgr.cloud →
Section 3

Process Traces — W1 through W7

Seven end-to-end traces, each proving a different slice of the four-part body actually working. W1–W4 are static Excalidraw diagrams; W5–W7 are interactive HTML diagrams built with the html_diagrams skill and deployed live on bc-ops.

Trace A
W1 — Market Intelligence Pipeline
Archon 10-node DAG: Stripe webhook → 45–90 min → 18 branded DOCX → Drive → delivery email. Zero human intervention.
Static diagram
workflow_mi_pipeline.excalidraw
Trace B
W2 — Daily Ops Digest
/daily-report: Cascade pulls gmail/calendar/gdrive/git/Hub DB/heart-api → branded HTML email. Pure Heart + NS, no LLM reasoning.
Static diagram
workflow_daily_digest.excalidraw
Trace C
W3 — Weekly Content Drafting
/create-content: 10-step flow, all four body parts cooperating; methodology skill-loading visible at step 4.
Static diagram
workflow_content_drafting.excalidraw
Trace D
W4 — Council-Driven Research Tick
*/30 min cron drains research_agenda through council → persistence → cadence recompute. Pure Brain + NS, no human in the loop.
Static diagram
workflow_research_tick.excalidraw
Trace E
W5 — Commercial Pipeline Stage Automation
7-stage sales pipeline flow with per-stage automated triggers (Legal draft on Negotiation entry, Ops client-creation on Closed Won).
Live
commercial-pipeline.srv796713.hstgr.cloud →
Reference
W6 — Account & Contact Lifecycle
20 stages / 4 phases: raw Hub import → classification → Hub→spoke sync → contact enrichment → outreach message generation.
Live
account-lifecycle.srv796713.hstgr.cloud →
Reference
W7 — Data & API Inputs Map
28 external data sources and agents feeding the Hub DB across 5 swimlanes, VPS-cron-verified.
Live
data-inputs.srv796713.hstgr.cloud →
Full detail
Open all trace write-ups →
Step-by-step tables, failure modes, and why each trace matters — the canonical trace doc.
Section 4

Live Product — 13 Frontend Tabs

The Hub frontend as Brian actually navigates it day to day. Auth-gated (no public deep-links) — this is a map of what's inside, defined in src/config/navigation.ts.

Dashboard
Home overview — pipeline, activity, and health at a glance.
Inbox
Cortex-classified email triage: action required, follow-up, informational, noise.
Accounts
Company records, BCAS scoring, classification, lifecycle stage.
Contacts
Person records linked to accounts, enrichment status, engagement.
Campaigns
Outreach campaigns across EmailBison and HeyReach, per-workspace.
Events
Conference and event tracking (ISCT, ASCO, ASGCT, and more).
News
News Intelligence feed — funding, leadership moves, industry signal.
Social
Social listening and engagement tracking.
Knowledge
RAG-searchable knowledge base browser.
Content Studio
Content drafting workspace — blog, social, email assets.
Command Center
The Content Command Center — review/approve queue for all agent-drafted content.
Learning Library
Cataloged videos, GitHub repos, articles, and research the org has ingested.
Metrics
Pipeline and performance analytics.
Section 5

Infrastructure — 5 VPS + 2 Databases

One tenant per VPS, period. The only shared host is bc-ops (BC's own ops + a handful of BC-owned demo properties).

AliasIPHostnameRole / Tenant
bc-ops168.231.69.81srv796713BC Ops — heart-api, n8n workflows, weekly digests, this master map's live host
bc-kb72.62.96.10srv1573317BC Knowledge Base — brain-api, LiteLLM proxy, Qwen local, Claude Code (Max subscription host)
bc-made187.124.144.235srv1472429Made Scientific (client tenant)
bc-cubicbio45.132.240.109srv1672237CubicBio — NK-cell therapy prospect
bc-spancorr31.97.141.214srv1720061SpanCorr (client tenant) — app + MIA + research site

Brain DB — sfursphaicrvazkafbdi

All embeddings (kb_chunks_extended, Gemini-768), Cat-A SQL mirrors, council_decisions, research_reports, research_agenda, memory_events.

Hub DB / Life Sciences Hub — mjsgtszehjltxmbxtctz

All operational/CRM data: accounts, contacts, campaigns, heartbeat_log, system registries, 25+ Hub Edge Functions, 30+ pg_cron jobs. Heart's substrate — untouched by Brain except via KB-mirror cron.

This page is a launcher, not a source of truth — every claim above traces back to a canon doc or live diagram, linked in place. Front-door canon: wiki/01_architecture.md and _executive/MASTER_KNOWLEDGE_ARCHITECTURE.md, both updated 2026-07-27 to point here as the visual front door.  ·  Sources: _executive/agents/README.md, _executive/agents/AGX_ORG_MAP.html, _executive/BIOCREATIVE_END_TO_END_TRACES.md, _executive/VPS_CANONICAL_MAP.md, _executive/MASTER_KNOWLEDGE_ARCHITECTURE.md, src/config/navigation.ts  ·  Built with the html_diagrams skill v1.1  ·  Source: _shared/brands/biocreative/diagrams/workflows/biocreative_commercial_os.html